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      研究組長

      姓  名: 黃銘坤 研 究 組: 植物功能基因組研究組
      職  務(wù): 研究組長 職  稱: 副研究員
      通訊地址: 江西省南昌市溪霞鎮(zhèn)溪霞農(nóng)業(yè)園科研中心
      郵政編碼: 330114 電子郵箱: huangmk@lsbg.cn
      姓  名: 黃銘坤
      研 究 組: 植物功能基因組研究組
      職  務(wù): 研究組長
      職  稱: 副研究員
      通訊地址: 江西省南昌市溪霞鎮(zhèn)溪霞農(nóng)業(yè)園科研中心
      郵政編碼: 330114
      電子郵箱: huangmk@lsbg.cn

      學(xué)習(xí)經(jīng)歷:

      2012年9月-2016年1月 中國科學(xué)院華南植物園 博士

      2009年9月-2012年6月 華南農(nóng)業(yè)大學(xué) 碩士

      2005年9月-2009年6月 華南農(nóng)業(yè)大學(xué) 學(xué)士 

       

      工作經(jīng)歷:

      2022年1月-至今 江西省、中國科學(xué)院廬山植物園

      2018年3月-2021年12月 香港中文大學(xué)

      2016年3月-2018年2月 北京中藥研究所/北京諾禾致源生物科技公司

        

      研究領(lǐng)域:

      1. 植物功能基因組學(xué)、生物信息學(xué) (Dry lab);

      2. 植物分子生物學(xué)、植物基因編輯 (Wet lab); 


      承擔(dān)科研項目情況:

      1. 國家自然基金地區(qū)面上項目,主持

      2. 江西省高層次與緊缺型人才計劃項目,主持

      3. 江西省自然科學(xué)基金面上項目,主持

      4. 廬山植物園專項基金,主持

      5. 香港中文大學(xué)優(yōu)秀博士后基金項目 (Impact Postdoctoral Fellowship Scheme of The Chinese University of Hong Kong) ,主持

      6. 香港AoE 項目 (Hong Kong Research Grants Council Area of Excellence Scheme, AoE/M-403/16),參與

      7. 香港羅桂祥基金項目 (Lo Kwee-Seong Biomedical Research Fund),參與

      8. 中國博士后創(chuàng)新計劃 (BX201600155) 基金項目,主持


      論文及論著:

      --2024--

      1. Huang, M.#, Hu, Y., Zhang, L., Yang, H., Feng, C., Jiang, C., Xie, N., Liu, D., Chen, S., Wang, J., et al. (2024). Decoding the chromatin accessibility in Andrographis paniculata genome, a case study of genome-wide investigation of the cis-regulatory elements in medicinal plants. Acta Pharm Sin B 14:4179-4182. 10.1016/j.apsb.2024.06.012.

      2. Jia, T., Yang, H., Zhou, D., Zhao, S., Wang, J., Zhang, T., Huang, M., Kong, D., and Liu, Y. (2024). Establishment of a Genetic Transformation and Gene Editing Method by Floral Dipping in Descurainia sophia. Plants (Basel) 1310.3390/plants13202833.

      3. Wang, J., Pu, Z., Zhang, W., Qu, M., Gao, L., Pan, W., Sun, Y., Fu, C., Zhang, L., Huang, M.#, Yufang Hu#. (2024). Identification of the New GmJAG1 Transcription Factor Binding Motifs Using DAP-Seq. Plants (Basel) 1310.3390/plants13121708.

      4. Yung, W.S., Wang, Q., Chan, L.Y., Wang, Z., Huang, M., Li, M.W., Wong, F.L., and Lam, H.M. (2024). DNA Hypomethylation Is One of the Epigenetic Mechanisms Involved in Salt-Stress Priming in Soybean Seedlings. Plant Cell Environ 10.1111/pce.15297.

      專利申請

      馮晨、黃銘坤、劉亞芳、張弋、張強,2024,協(xié)同抑制乙酰膽堿酯酶的加蘭他敏組合物,發(fā)明專利,CN116570600B

      --2023--

      1. Huang, M#., Zhang, L., Yung, W.-S., Hu, Y., Wang, Z., Li, M.-W., and Lam, H.-M. (2023). Molecular evidence for enhancer–promoter interactions in light responses of soybean seedlings. Plant Physiol 10.1093/plphys/kiad487.

      2. Su, W., Zhu, C., Fan, Z., Huang, M., Lin, H., Chen, X., Deng, C., Chen, Y., Kou, Y., Tong, Z., et al. (2023). Comprehensive metabolome and transcriptome analyses demonstrate divergent anthocyanin and carotenoid accumulation in fruits of wild and cultivated loquats. Front Plant Sci 14:1285456. 10.3389/fpls.2023.1285456.

      3. Zhang, L., Yung, W.-S., Hu, Y., Wang, L., Sun, W., and Huang, M#. (2023). Establishment of a convenient ChIP-seq protocol for identification of the histone modification regions in the medicinal plant Andrographis paniculata. Medicinal Plant Biology 210.48130/MPB-2023-0006.

      4. Zhu, W., Huang, J., Huang, M., and Lu, P. (2023). ATAC-Me simultaneously decodes chromatin accessibility and DNA methylation. Trends Plant Sci 28:968-969. 10.1016/j.tplants.2023.05.013.

      --2022--

      1. Zhang L, Yung WS, Huang M# (2022) STARR-seq for high-throughput identification of plant enhancers. Trends Plant Sci 27(12):1296-1297

      2. Zhang L, Yung WS, Sun W, Li MW, Huang M# (2022) Genome-wide characterization of Nuclear Factor Y transcription factors in Fagopyrum tataricum. Physiol Plant: e13668

      3. Zhang L, Yung WS, Wang Z, Li MW, Huang M# (2022) Optimization of an Efficient Protoplast Transformation System for Transient Expression Analysis Using Leaves of Torenia fournieri. Plants (Basel) 11(16)

      4. Huang M, Zhang L, Zhou L, Yung WS, Wang Z, Xiao Z, Wang Q, Wang X, Li MW, Lam HM# (2022) Identification of the accessible chromatin regions in six tissues in the soybean. Genomics 114(3): 110364

      5. Wang G, Li X, Shen W, Li M-W, Huang M, Zhang J, Li H# (2022) The chromatin accessibility landscape of pistils and anthers in rice. Plant Physiol

      6. Wang Z, Huang C, Niu Y, Yung W-S, Xiao Z, Wong F-L, Huang M, Wang X, Man C-K, Sze C-C, Liu A, Wang Q, Chen Y, Liu S, Wu C, Liu L, Hou W, Han T, Li M-W, Lam H-M# (2022) QTL analyses of soybean root system architecture revealed genetic relationships with shoot-related traits. Theoretical and Applied Genetics 135(12): 4507-4522

      7. Xiao Z, Wang Q, Li M-W, Huang M, Wang Z, Xie M, Varshney RK, Nguyen HT, Chan T-F, Lam H-M# (2022) Wildsoydb DataHub: a platform for accessing soybean multiomic datasets across multiple reference genomes. Plant Physiol

      --2021--

      1. Huang M, Li MW, Lam HM# (2021) How noncoding open chromatin regions shape soybean domestication. Trends Plant Sci 26(9):876-878.

      2. Huang M, Zhang L, Zhou L, Wang M, Yung W-S, Wang Z, Duan S, Xiao Z, Wang Q, Wang X, Li M-W, Lam H-M# (2021) An expedient survey and characterization of the soybean JAGGED 1 (GmJAG1) transcription factor binding preference in the soybean genome by modified ChIPmentation on soybean protoplasts. Genomics 113(1): 344-355

      3. Huang M, Zhang L, Zhou LM, Yung WS, Li MW, Lam HM# (2021) Genomic Features of Open Chromatin Regions (OCRs) in Wild Soybean and Their Effects on Gene Expressions. Genes 12(5)

      4. Zhang L, Zhou L, Yung WS, Su W, Huang M# (2021) Ectopic expression of Torenia fournieri TCP8 and TCP13 alters the leaf and petal phenotypes in Arabidopsis thaliana. Physiol Plant

      5. Yung WS, Wang Q, Huang M, Wong FL, Liu A, Ng MS, Li KP, Sze CC, Li MW, Lam HM# (2021) Priming-induced alterations in histone modifications modulate transcriptional responses in soybean under salt stress. Plant J

      6. Wang G, Li X, Ye N, Huang M, Feng L, Li H, Zhang J# (2021) OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice. New Phytol

      --2021以前--

      1. Sun W, Leng L, Yin Q, Xu M, Huang M, Xu Z, Zhang Y, Yao H, Wang C, Xiong C, Chen S, Jiang C, Xie N, Zheng X, Wang Y, Song C, Peters RJ, Chen S# (2019) The genome of the medicinal plant Andrographis paniculata provides insight into the biosynthesis of the bioactive diterpenoid neoandrographolide. Plant J 97(5): 841-857

      2. Hu Y, Zhou L, Huang M, He X, Yang Y, Liu X, Li Y, Hou X# (2018) Gibberellins play an essential role in late embryogenesis of Arabidopsis. Nature Plants 4(5): 289-298

      3. Liu X, Hu P, Huang M, Tang Y, Li Y, Li L, Hou X# (2016) The NF-YC–RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nature Communications 7(1): 12768

      4. Huang M, Hu Y, Liu X, Li Y, Hou X# (2015) Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci 6: 955

      5. Huang M, Hu Y, Liu X, Li Y, Hou X# (2015) Arabidopsis LEAFY COTYLEDON1 Mediates Postembryonic Development via Interacting with PHYTOCHROME-INTERACTING FACTOR4. Plant Cell 27(11): 3099-3111

      6. Huang M, Ma C, Yu R, Mu L, Hou J, Yu Y, Fan Y# (2015) Concurrent changes in methyl jasmonate emission and the expression of its biosynthesis-related genes in Cymbidium ensifolium flowers. Physiol Plant 153(4): 503-512

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